Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLT-QLETMKDKIQTLDYLFQNCKPEFLGGT-VDEWLNENSSDTIEKSVDMIRHHPLVPS------YVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
1DDZ Chain:A ((63-231))
--NGQSPEYLWIGCADSRVPAN--QLLDLPAGEVFVHRNIANQCIHSDISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLGLIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSS----------
General information:
TITO was launched using:
RESULT:
Template:
1DDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39277 for 1258 contacts (-31.2/contact) +
2D Compatibility (PS) -17174 + (NN) -3037 + (LL) 756
1D Compatibility (HY) -7600 + (ID) 1050
Total energy: -67382.0 ( -53.56 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_1DDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DDZ-query.scw
PDB file :
Tito_Scwrl_1DDZ.pdb
: