Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGKGTVVDVDGKKMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKENKIAVV-DRAGYGYSEVSHDDRDIDTVLEQTRKALMK---SGNKPPYILMPHSISGIEAMYWAQKYPKEIKAIIAMDIGLPQQYVTYKLSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDEEKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKYAIQNRKDYEAFAAQFNTADIKELRGTHSIYLYQPDQIYKLSMEFMRKVR-- |
2WTM Chain:A ((2-251)) | --------GAMYIDCDGIKLNAYLD------------------------------MPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLS--------------------------PAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTK----------PVLIVHGDQDEAV-------PYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84432 for 2146 contacts (-39.3/contact) +
2D Compatibility (PS) -26171 + (NN) -6153 + (LL) 6240
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -118166.0 ( -55.06 by residue)
QMean score : 0.391
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