Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKWMCSICCAAVLLAGGAAQAEAVPNEPINWGFKRSVNHQPPDAGKQLNSLIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLDVLKKHRVT-GTFFVTGHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKGKKYAYDHMIKQAHPGAIYLLHTVSR--DNAEALDDAITDLKKQGYTFKSIDDLMFEKEMRLPSL
4M1B Chain:A ((50-246))----------------------------------------------------------YKGDTSKKQVAFTFDISWGDKKAIPILDTLKERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVK-QIKLLRPPSGDFNKATLKIAESLGYTVVHWSNNSNDWKNP---GVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVSQLISNT-------


General information:
TITO was launched using:
RESULT:

Template: 4M1B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1035 -86027 -83.12 -443.44
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -83.12
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.592

(partial model without unconserved sides chains):
PDB file : Tito_4M1B.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4M1B-query.scw
PDB file : Tito_Scwrl_4M1B.pdb: