Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKVFLIGANGQIGQRLVSLFQDNPDHSIRAMVRKEEQKAS--------LEAAGAEAVLANLEGSPEEIAAAAKGCDAIIFTAGSGGSTGYDKTLLVDLDGAAKAIEAAAIAG-IKRFIMVSALQAHNREN-WN-EALKPYYVAKHYADKILEASGLTYTIIRPGGLRNEPGTGT-------------VSAAKD--LERGFISRDDVAKTVIASLDEKNTENRAFDLTEG-D-TPIAEALKKL
1QYD Chain:A ((5-235))SRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD-DHQRLVDALKQVDVVISALAGGVL-------SHHILEQLKLVEAIKEAGNIKRFLP-SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQI-


General information:
TITO was launched using:
RESULT:

Template: 1QYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1000 -117557 -117.56 -579.10
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -117.56
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.493

(partial model without unconserved sides chains):
PDB file : Tito_1QYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1QYD-query.scw
PDB file : Tito_Scwrl_1QYD.pdb: