Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQ---QKLSDVMPVESDAFIYTDIHACFTETQPDVLIDLTTPEIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKGIGAIIAPNFALGAILMMKFSKMAANYF---EDVEIIELHHDQKLDAPSGTALKTAEMISEVRKEK--QQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRASFMSGVKLSVEQVMKIDQLVYGLENIID
4F3Y Chain:A ((6-270))---SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVC--AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGE--KIALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGR---HGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSYAQGALRAARFLAGRDAGFFDMQDVLG


General information:
TITO was launched using:
RESULT:

Template: 4F3Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1305 -42353 -32.45 -164.80
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -32.45
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.529

(partial model without unconserved sides chains):
PDB file : Tito_4F3Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4F3Y-query.scw
PDB file : Tito_Scwrl_4F3Y.pdb: