Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKMTNNTVLITGGSAGIGLELAKRLLELGNEVIICGRSEARLAEAKQQ----LPNIHTKQCDVADRSQREALYEWALKEYPNLNVLVNNAGIQKEIDFKKGTEELFVDGDEIELNFQAPVHLSALFTPHLMKQPEAAIVQVTSGLAFNPLAVYPVYCATKAALHSFSLTLRHQLRD---TSVEVIEMAPPMVDTGLNQKSRDKQGLTYRGISSEEYVQYFLDGLKEGKQEITNER-VEGLRDATRADYDRLFEQMNTQEN 1YB1 Chain:A ((28-268)) -SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLF-AT-QDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA-HVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTS---LGPTLEPEEVVNRLMHGILTEQKMIFIPSSIAFLTTLERIL-------------

General information: TITO was launched using: RESULT: Template: 1YB1.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1213 -52185 -43.02 -224.94 target 2D structure prediction score : 0.67 Monomeric hydrophicity matching model chain A : 0.71 3D Compatibility (PKB) : -43.02 2D Compatibility (Sec. Struct. Predict.) : 0.67 1D Compatibility (Hydrophobicity) : 0.71 QMean score : 0.458

(partial model without unconserved sides chains): PDB file : Tito_1YB1.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1YB1-query.scw PDB file : Tito_Scwrl_1YB1.pdb: