Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAVESTLRRVAKDLTGLRQRWALVGGFAVSARSEPRFTRDVDIVVAVANDDAAESLVRQLLTQQYHLLASVEQDAARRLAAVRLGATADTAANVVVDLLFASCGIEPEIAEAAEEIEILPDLVAPVATTAHLIAMKLLARDDDRRPQDRSDLRALVDAASPQDIQDARKAIELITLRGFHRDRDLAAEWTRLAAKW
2NRR Chain:A ((344-494))
----MEALEELMKLL-NMKDFPYRIEGIDIS------HLYTVASLVVFEDGFPKKGDYRRYKIDDYESIRTV---VKRRYSKHPL-----------PNLLFVDGG--------IGQVNAAIEALKEIGKDCPVVGLATVVFENREIHLPHDH-------------------------PVLRLLVQIRDETHRFAVSY
General information:
TITO was launched using:
RESULT:
Template:
2NRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88184 for 1092 contacts (-80.8/contact) +
2D Compatibility (PS) -15257 + (NN) -4655 + (LL) 5040
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -110856.0 ( -101.52 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_2NRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NRR-query.scw
PDB file :
Tito_Scwrl_2NRR.pdb
: