Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPGS------RRASPQSAREVVELDRDEAMRLLASVDHGRVVFT---RAALPAIRPVNHLVVDGRVIGRTRLTAKVSVAVR-SSADAGV-VVAYEADDLDPRRRTGWSVVVTGLATEVSDP-EQVARYQR-----LLHPWVNMAMDTV---VAIEPE-IVT------GIRIVADSRTP
2VQZ Chain:A ((3-165))
SSSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGKDEQSIAEAIIVAMVFSQEDCMIKAVR-GDLNFVNRAN----------QRLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMVGVLPDMTPSTEMSMRGIRVSK-----
General information:
TITO was launched using:
RESULT:
Template:
2VQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25471 for 858 contacts (-29.7/contact) +
2D Compatibility (PS) -13531 + (NN) 4079 + (LL) 1008
1D Compatibility (HY) -1200 + (ID) 1650
Total energy: -36765.0 ( -42.85 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_2VQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQZ-query.scw
PDB file :
Tito_Scwrl_2VQZ.pdb
: