Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRTPVILVAGQDHTDEVTGALLRRTG--TVVVEHRFDGHVVRRMTATLSRGELITTEDALEFAHGCVSCTIRDDLLVLLRRLHRRDNVGRIVVHLAPWLEPQPICWAIDHVRVCVGHG--YPDGPAALDVRVAAVVTCVDCVRWLPQSLGEDELPDGRTVAQVTVGQAEFADLLVLTHPEPVAVAVLRRLAPRARITGGVDRVELALAHLDDNSRRGRTDTPHTPLLAGLPPLAADGEVAIVEFSARRPFHPQRLHAAVDLLLDGV-VRTRGRLWLANRPDQVMWLESAGGGLRVASAGKWLAAMAASEVAYVDLERRLFADLMWVYPFGDRHTAMTVLVCGADP-TDIVNALNAALLSDDEMASPQRWQSYVDPFGDWHDDPCHEMPDAAGEFSAHRNSGESR |
| 4C88 Chain:A ((0-337)) | -GMPTI----NSIQTTVNGVVKIVKPFNNDIAGEQFDPHVLQTLTAFKQPA--ILENDLAALRSGSLTPAIADPVGDAVTVQSRNITALNRTVSVE-WLTPQNV---INHTVLVYFHGGAFYGGVPGNNTVLLKLVAAKSHCEILNVDY--SLAPEAPAPAGILDGLAIFQYLEQRDAETMITVA------------GDSAGANVIMAATNLNQQLGSNRINQQLLLY---PVTA----------------PNADHAGPLWDLAAFPIIDSQRAILTNYHDLFRQLDSIMTDYYVPENFDSHSPLIS------PLHQENF----------TMTPPTTIMVGEFDPFRPQAWAYAQRLAAADTATTFIQYQGLNHAFAPLVDQY-WQSQDVAQVMAAALI----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20282 for 2879 contacts (-7.0/contact) +
2D Compatibility (PS) -34368 + (NN) -5350 + (LL) 4624
1D Compatibility (HY) 14000 + (ID) 1100
Total energy: -42476.0 ( -14.75 by residue)
QMean score : 0.073
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