Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGISRRTFGLAAGFGAIGAGGLGGGCSTRSGPTPTPEPASRGVGVVLSHEQFRTDRLVAHAQAAEQAGFRYVWASDHLQPWQDNEGHSMFPWLTLALVGNSTSSILFGTGVTCPIYRYHPATVAQAFASLAILNPGRVFLGLGTGERLNEQAATDTFGNYRERHDRLIEAIVLIRQLWSGERISFTGHYFRTDELKLYDTPAMP--PPIFVAASGPQSATLAGRYGDGWIAQARDINDAK-LLAAFAAGAQAAGRDPTTLGKRAELFAVVGDDKAAARAADLWRFTAGAVDQPNPVEIQRAAESNPIEKVLANWAVGTDPGVHIGAVQAVLDAGAVPFLHFPQDDPITAIDFYRTNVLPELR------------ |
| 1M41 Chain:A ((1-361)) | -----SLNMFWFLPTHGDGH---------YLGTEEGSRPVD-------------HGYLQQIAQAADRLGYTGVLIPTGRSCED--------AWLVAASMIPVTQRL--KFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIR---LHVIVRETNDEAWQAAERLISHLLEISPNLWAGVGLVRGGA-----GTALVGDGPTVA-ARINEYAALGIDSFV-LSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M41.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150646 for 2634 contacts (-57.2/contact) +
2D Compatibility (PS) -34285 + (NN) -21358 + (LL) 2416
1D Compatibility (HY) -5600 + (ID) 3200
Total energy: -212673.0 ( -80.74 by residue)
QMean score : 0.314
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