Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLARLRGRRVVPQRSAGELDAMAAAGAVVAAALRAIRAAAAPGTSSLSLDEIA-ESVIRESGATPSFLGYHGYPASICASINDRVVHGIPSTAEVLAPGDLVSIDCGAVLDGWHGDAAITFGVGALSDADEALSEATRESLQAGIAAMVVGNRLTDVAHAIETGTRAAELRYGRSFGIVAGYGGHGIGRQMHMDPFLPNEGAPGRGPLLAAGSVLAIEPMLTLGTTKTVVLDDKWTVTTADGSRAAHWEHTVAVTDDGPRILTLG
4PNC Chain:A ((6-250))
---------------KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEA------EGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTL-
General information:
TITO was launched using:
RESULT:
Template:
4PNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116231 for 2115 contacts (-55.0/contact) +
2D Compatibility (PS) -26828 + (NN) -10965 + (LL) 1528
1D Compatibility (HY) -18000 + (ID) 4650
Total energy: -175146.0 ( -82.81 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4PNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PNC-query.scw
PDB file :
Tito_Scwrl_4PNC.pdb
: