Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLATIDKFAYEKSMLINVGDEKGTLLDAAVRRADPALALELGTYLGYGALRIAR-AAPEARVYSVELAEANASNARRIWAHAGVDDRVVCVVGTIGDGGRTLDALTEHGFATGTLDFVFLDHDKKAYLPDLQSILDRGWLHPGSIVVADNVRVPGAPKYRAYMRRQQGMSWNTIEHKTHLEYQTLVPDLVLESEYLG
2ZVJ Chain:A ((27-206))
VLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD----LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSS--SFECTHYSSYLEYMKVV-----------
General information:
TITO was launched using:
RESULT:
Template:
2ZVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87270 for 1418 contacts (-61.5/contact) +
2D Compatibility (PS) -19477 + (NN) -6043 + (LL) 448
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -133442.0 ( -94.11 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_2ZVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZVJ-query.scw
PDB file :
Tito_Scwrl_2ZVJ.pdb
: