Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------MDTVLGLSITPTTLGWVLAEGHGADGAILDRNELELH-SGRNAQAIHTAEQLAAEVLLAHEVAAAGD---HRLRVIGVTWNAEASAQAALLVESLTGAGFDNVVPVRRLRAIETLAQAIAPVIGYE-QIAVCVLEHESATVVMVDTHDGKTQIAVKH------VCRGLSGLTSWLTGMFGRDAWRPAGVVVVGSDSEVSEFSWQLERVLPVPVFAQTMAQVTVARGAALAAAQSTEFTDAQLVADSVSQPTVAPRRSRHYAGAAAALAAAAVTFVASLSLAVGIQLAPHNDTGTAKHGAHKPTPRIAKAVAPAVPPPPTVTPPVPARAPRPAAQHEPPARVTSGEALTEPNPPEEQPNASAPQQDRNDSQPITRVLEHIPGAYGDSAPPAE |
| 2VDU Chain:B ((2-436)) | SVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPN-HWEFA-GKWSDDFPIYSYIRNLRLTSDESRLIACADSD--KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID-INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDY---LLLSAGGDDKIFAWDWKTGKNLS-----------TFDYNSLIKPYLNDQHL--AIIEFAVSKIIKSKNLP------------FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAH--NDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTK-KEEIYPLYNVSSL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28612 for 2644 contacts (-10.8/contact) +
2D Compatibility (PS) -35592 + (NN) -814 + (LL) 4080
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -74188.0 ( -28.06 by residue)
QMean score : 0.063
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