Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------------------------------------------MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRA-GGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLF--TPDPSLTITRDGSRDAVSNARPVDA-LHAHQAREVVRRAQAMAY------------------------------------------------------------------------------------------- |
| 4RKS Chain:A ((21-337)) | TYRSIGSTAYPTIGVVLLGGIANPVTRTPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRYSSVFEEAFGTKTVSYSSQNFGILSGSSDAGAASIGAAILGLKPD--------------LDPHDVENDLRAVSESAGRSLFGGLTITWSDGFH--------AYTEKILDPEAFSGYSIVAFAFDYQRNPSDVIHQNIVRSDLYPARKKHADEHAHMIKEYAKTNDIKGIFDLAQEDTEEYHSILRGVGVNVIRENMQKLISYLKLIRKDYWNAYIVTGGSNVYVAVESENADRLFSIENTFGSKKKMLRIVGGAWHRRPE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21929 for 698 contacts (-31.4/contact) +
2D Compatibility (PS) -13667 + (NN) -4874 + (LL) 1304
1D Compatibility (HY) 800 + (ID) 1650
Total energy: -40016.0 ( -57.33 by residue)
QMean score : 0.268
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