Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGEGSRRPSGMLMSVDLEPVQLVGPDGTPTAERRYHRDLPEETLRWLYEMMVVTRELDTEFVNLQRQGELALYTPCRGQEAAQVGAAACLRKTDWLFPQYRELGVYLVRGIP--------PGHVGVAWRGTW---HGGLQFTTKCCAPMSVPIGTQTLHAVGAAMAAQRLDEDSVTVAFLGDGATSEGDVHEALNFAAVFTTPCVFYVQNNQWAISMPVSRQTAAPSIAHKAIGYGMPGIRVDGNDVLACYAVMAEAAARARAGDGPTLIEAVTYRLGPHTTADDPTRYRSQEEVDRWATLD-PIPRYRTYLQDQGLWSQRLEEQVTARAKHVRSELRDAVFDA---PDFDVDEVFTTVYAEITPGLQAQREQLRAELARTD |
1V11 Chain:A ((42-386)) | --------------------QIINPSEDP--------HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCK--ERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAI------------------------DHPISRLRHYLLSQGWWD---EEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHL---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1V11.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -143444 for 2445 contacts (-58.7/contact) +
2D Compatibility (PS) -34006 + (NN) -21842 + (LL) 3424
1D Compatibility (HY) -20000 + (ID) 6350
Total energy: -222218.0 ( -90.89 by residue)
QMean score : 0.415
|
|
|