Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGAN----------AGPDRSLIRAQSWDIDLPNQFE---AAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRE-TTMAGLGELKPVLEG-GIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI |
| 4XL4 Chain:A ((5-391)) | ----VIASAVRTAIGSYGKSLKDVPAVDLGATAIKEAVKKAGIKPE----DVNEVILGNVLQAG-LGQNPARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAPYLANNARWGYRMGNAKFVDEMITDGLWD--AFNDYHMGITAENIAERWNISREEQDEFALASQKKAEEAIKSGQFKDEIVPV---VIKGRKGET----VVDTDEHPRFGSTIEGLAKLKPAFKKDGTVTAGNASGLNDCAAVLVIMSAEKAKELGVKPLAKIVSYGSAGVDPAIMGYGPFYATKAAIEKAGWTVDELDLIESNEAFAAQSLAVAKDLKFDMNKVNVNGGAIALGHPIGASGARILVTLVHAMQKRDAKKGLATLSIGGGQGTAILLEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XL4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192732 for 3685 contacts (-52.3/contact) +
2D Compatibility (PS) -40047 + (NN) -16922 + (LL) 872
1D Compatibility (HY) -16400 + (ID) 7400
Total energy: -272629.0 ( -73.98 by residue)
QMean score : 0.443
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