Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
1G9T Chain:B ((10-177))
--------------------------------------EVMIPEAEIKARIAELGRQITERYKD----SGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASS--------RDLKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKV------
General information:
TITO was launched using:
RESULT:
Template:
1G9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154284 for 1257 contacts (-122.7/contact) +
2D Compatibility (PS) -17446 + (NN) -4850 + (LL) 2780
1D Compatibility (HY) -22000 + (ID) 4000
Total energy: -199800.0 ( -158.95 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1G9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G9T-query.scw
PDB file :
Tito_Scwrl_1G9T.pdb
: