Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALVVQKYGGSSVADAERIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLLDLAQQVCPAPPPRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKI--IDVTPGRLQTALEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVDGIFSADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYS-DRPGTVVVGSIKDVPMEDPILTGVAHDRSEAKVTIV--GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS-RDVGPAAVEKLDSLRNEIG---FSQLLYDDHIGK----VSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLGGDEEATVYAGTGR |
2HMF Chain:B ((118-466)) | --------------------------------------------------------------PKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKE-RLLPLLKEGIIPVVTGFIGTTEEGY-ITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLIT---NDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS-----ETNISLVVSEEDVDKA----LKALKREFGDFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221597 for 2648 contacts (-83.7/contact) +
2D Compatibility (PS) -36303 + (NN) -15027 + (LL) 5244
1D Compatibility (HY) -30400 + (ID) 6000
Total energy: -304083.0 ( -114.83 by residue)
QMean score : 0.525
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