Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTL-SLVYVDGQPR---LVLNRGESRGTIKLSPKIRS-----TPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYI-------VAGNAERIVSGT--------GDRIYARGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMPGEPSR------EVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVT--GESVKIP-------DERAGLLMVFRTYKKLS-----YALVLMASRPLSVTDRVQNP---- |
| 4MND Chain:A ((40-457)) | LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFN-YKIVRHDR---------PEKGNGYSLLVAKNHVEDRFILTMGDHVYSQQFIEKAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRALVSAAVGDG-FISRKINRKISTRISAAI-VNKVNPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSIL---DGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISLQWIFWMFLFVAAISLTRVVVTLLAVLVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24708 for 2298 contacts (-10.8/contact) +
2D Compatibility (PS) -33655 + (NN) -2321 + (LL) 940
1D Compatibility (HY) -19200 + (ID) 2750
Total energy: -81694.0 ( -35.55 by residue)
QMean score : 0.102
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