Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAG-CPVSKVLNAKISLDASLDG---
1ML8 Chain:A ((1-134))
------MQARVKWVEGLTFLGESASGHQILMDGNS--------------GDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRERL----FTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA
General information:
TITO was launched using:
RESULT:
Template:
1ML8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55356 for 879 contacts (-63.0/contact) +
2D Compatibility (PS) -13583 + (NN) -6496 + (LL) 848
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -80287.0 ( -91.34 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_1ML8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ML8-query.scw
PDB file :
Tito_Scwrl_1ML8.pdb
: