Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYIPADTSKPNYTVDHSGNLVIIGPDGEQHGFIRAPLNNAKLEAQLPGVLKPQA
2L5O Chain:A ((1-140))
-----------------------------------------------DSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCP-GCVSEMPKIIKTANDYKNK---NFQVLAVAQPI--DPIESVRQYVKDYGLPFTVMYDAD---KAVGQAFGTQVY--------------PTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSD
General information:
TITO was launched using:
RESULT:
Template:
2L5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94693 for 1080 contacts (-87.7/contact) +
2D Compatibility (PS) -15558 + (NN) -14631 + (LL) 5492
1D Compatibility (HY) -8800 + (ID) 1400
Total energy: -129590.0 ( -119.99 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2L5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L5O-query.scw
PDB file :
Tito_Scwrl_2L5O.pdb
: