Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIA----NTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCA---AAYRDAL---------PDSVEPEEGRRIE-PPRC--PACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
4UTV Chain:B ((13-274))
LTAFREHFAKAKHIAIITGAGVSAESGVPTFRGP-GGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRREVMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASRGVPVAEFNME-------FKYHFEGPCGSTLPPALE-----
General information:
TITO was launched using:
RESULT:
Template:
4UTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136081 for 1905 contacts (-71.4/contact) +
2D Compatibility (PS) -25808 + (NN) -14480 + (LL) 720
1D Compatibility (HY) -16400 + (ID) 5200
Total energy: -197249.0 ( -103.54 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4UTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UTV-query.scw
PDB file :
Tito_Scwrl_4UTV.pdb
: