Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKA-VLDAGDSLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPALTLRDELAPQRAGFAMHLAE
3NHJ Chain:B ((4-221))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS--------GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
3NHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149146 for 1678 contacts (-88.9/contact) +
2D Compatibility (PS) -23180 + (NN) -7492 + (LL) 1644
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -200374.0 ( -119.41 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_3NHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NHJ-query.scw
PDB file :
Tito_Scwrl_3NHJ.pdb
: