Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKKHTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEHFIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITIDTLSEDPDLAVKRIISYLETNQPA
5CB6 Chain:D ((24-189))
----------------------RGVTIWLTGLSGAGKTTITHALEKKLRDSGYRLEVLDGDVVRTNLTKGLGFSKEDRDTNIRRIGFVSHLLTRNGVIVLVSAISPYAAIRQEVKHTIG--DFLEVFVNAPLAVCEERDVKGLYAKARSGEIKGFTGIDDPYEPPTNPDVECRTDLEELDESVGKIWQKLVDLKYI
General information:
TITO was launched using:
RESULT:
Template:
5CB6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94378 for 1358 contacts (-69.5/contact) +
2D Compatibility (PS) -18919 + (NN) -11395 + (LL) 1388
1D Compatibility (HY) -12800 + (ID) 4150
Total energy: -140254.0 ( -103.28 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_5CB6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CB6-query.scw
PDB file :
Tito_Scwrl_5CB6.pdb
: