Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
4B0C Chain:E ((3-171))
--KQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
General information:
TITO was launched using:
RESULT:
Template:
4B0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127729 for 1323 contacts (-96.5/contact) +
2D Compatibility (PS) -17799 + (NN) -8348 + (LL) 260
1D Compatibility (HY) -25200 + (ID) 8450
Total energy: -187266.0 ( -141.55 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4B0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B0C-query.scw
PDB file :
Tito_Scwrl_4B0C.pdb
: