Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRGD
4NTM Chain:E ((6-120))
--LFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRG-
General information:
TITO was launched using:
RESULT:
Template:
4NTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77297 for 807 contacts (-95.8/contact) +
2D Compatibility (PS) -12432 + (NN) -7007 + (LL) 236
1D Compatibility (HY) -13600 + (ID) 4450
Total energy: -114550.0 ( -141.95 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_4NTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NTM-query.scw
PDB file :
Tito_Scwrl_4NTM.pdb
: