Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGEPGRIERLKGGIPLGRGGTAEEVARAILWLASDE-ASYSTGTFIDVSGGR
4DMM Chain:D ((30-265))
---IALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITR-DTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGR---IINIASVVGEMGNPGQA-NYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIAT-------------KLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGG-
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126478 for 2009 contacts (-63.0/contact) +
2D Compatibility (PS) -24842 + (NN) -11198 + (LL) 628
1D Compatibility (HY) -19600 + (ID) 5250
Total energy: -186740.0 ( -92.95 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: