Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
4H8E Chain:A ((24-253))
---------IPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGL------------
General information:
TITO was launched using:
RESULT:
Template:
4H8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135552 for 1804 contacts (-75.1/contact) +
2D Compatibility (PS) -25321 + (NN) -16606 + (LL) 1636
1D Compatibility (HY) -21600 + (ID) 4500
Total energy: -201943.0 ( -111.94 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_4H8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H8E-query.scw
PDB file :
Tito_Scwrl_4H8E.pdb
: