Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MKNAMQVLRTWAARGVQWVGVAGVIGLSGAAQAGDYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQSILDAISRPAERVKQWKEYRPIFISDARISRGVDFWNKHAEDLARAEKEYGVPA----EIIVSIIGVETFFGRNTGSYRVM---DALSTLGFDYPPRADFFRKELREFLLLAREQQVDPLSLTGSYAGAMGLPQFMPSSFRAYAVDFDGDGHINIWSDPTDAIGSVASYFKQHGWVTGEPV-VSV-AEINDESAESAVTRGVDPTMSLGELRARGWRTHDALRDDQKVTAMRFVGDKGIEYWVGLPNFYVITRYNRSAMYAMAVYQLAGEIARARGAH |
| 4RHJ Chain:A ((19-318)) | SHMFSKFLMNVKGVTPRGSDWANRLGPVALFGYGA-----GMPRRAPLLDFFLQSP-----------RDCDHYAELTIHDKGPIECPPETVMFMPVLNCGQMLDEAAGTETPTSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLFPSDDIVIVHFSARPSVSDPRSPLRVLLD------------KGLLKGVVSVGNRQVSSEDRKVRKLHK-----------------MFYMDMRDIRNDYPVFISIDASVLDPAFAPAVDSPV----------AGGLSTRDLLHIMNGIRGPKVVG---IDVY-GYNPDLDVYRKDNVGLTAIALSKIIKEGILK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RHJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52661 for 2336 contacts (-22.5/contact) +
2D Compatibility (PS) -28932 + (NN) -5119 + (LL) 2528
1D Compatibility (HY) -6400 + (ID) 2600
Total energy: -93184.0 ( -39.89 by residue)
QMean score : 0.186
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