Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQ-RLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH
3DV2 Chain:C ((2-188))
--RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGY------KLRTPYPITTVEIPE----------------FAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE---
General information:
TITO was launched using:
RESULT:
Template:
3DV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148978 for 1390 contacts (-107.2/contact) +
2D Compatibility (PS) -19823 + (NN) -9965 + (LL) 668
1D Compatibility (HY) -17200 + (ID) 3400
Total energy: -198698.0 ( -142.95 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_3DV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DV2-query.scw
PDB file :
Tito_Scwrl_3DV2.pdb
: