Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
1TMM Chain:B ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
1TMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99416 for 1153 contacts (-86.2/contact) +
2D Compatibility (PS) -16149 + (NN) -6452 + (LL) 832
1D Compatibility (HY) -16000 + (ID) 3900
Total energy: -141085.0 ( -122.36 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1TMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMM-query.scw
PDB file :
Tito_Scwrl_1TMM.pdb
: