Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTALNVLIYPDDHLKVVCEPVTK-VNDAIRKIVDDMFDTMYQ------------EKGIGLAAPQVDILQRIITIDVEGDKQN--QFVLINPEILASEGETG---IEEGCLSIPG-FRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIAKS
2OKL Chain:A ((3-175))
LTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENPFA---------------
General information:
TITO was launched using:
RESULT:
Template:
2OKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85726 for 1171 contacts (-73.2/contact) +
2D Compatibility (PS) -15945 + (NN) -1017 + (LL) 1604
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -114884.0 ( -98.11 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_2OKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKL-query.scw
PDB file :
Tito_Scwrl_2OKL.pdb
: