Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
2VP5 Chain:B ((18-208))
-----------------TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIH------CKVLVLDAD------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97828 for 1424 contacts (-68.7/contact) +
2D Compatibility (PS) -20210 + (NN) -11036 + (LL) 3868
1D Compatibility (HY) -29200 + (ID) 9250
Total energy: -163656.0 ( -114.93 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2VP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VP5-query.scw
PDB file :
Tito_Scwrl_2VP5.pdb
: