Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------MGRG-NSTEVTEFHLLGFGVQHEFQHVLFIVLLLIYVTSLIGNIGMILLIKTDSRLQTPMYFFPQHL----AFVDI----CYTSAI--TPKMLQSF------TEENNLITFRGCVIQFL----------------------VYATFATSDC-----------------------------YLLAIMAMDCYVAICKPLRYPMI------------MSQTVYIQLVAGSYIIGSINASVHTGFTFS-----LSFCKSNKINHFFCDGLPILALSCSNIDINII-----LDVVFVGFDLMFTELVIIFSYIYIMVTILKMSSTAGRK-------KSFSTCASHLTAVTIFYGTLSYMYLQPQSNNSQEN----MKVASIFYGTVIPMLNPLIYSLRNKEGK-- |
| 4WW4 Chain:A ((3-458)) | QISEVRGNTRDHRTAAHTHIKGLGLNSSGIAEKQAAGFVGQCAAREACGVVVDLIKAHKMAGR-GVLLAGGPGTGKTALALAISQELGTKIPFCPITGSEIYSTEVKKTEVLMENFRRAIGLRVRETKDVYEGEVSTLLIGLKSARGQKLDQKERVQVGDVIYIETNTGACRSDAYATEFDLEAEEYVPIPKGEVHKKKEIVQDVTLHDLDVANARPDIISMMGQLMKPKMTEITDKLRMEINKVVQKYINQGV-AELIPGVLFIDEAHMLDIECFTYLNKALESPIAPIVVLASNRGIATIRGADDLKAAHGIPPDFLQRLLIIPTHPYEPDEIRRIVRIRAQTEGVQLTDAAVDRVAEHGVRISLRYCL---QLLAPASILARVNGRTQVDVQDIAEAEELFLDARRSANILTSTGGLH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -211792 for 2002 contacts (-105.8/contact) +
2D Compatibility (PS) -29635 + (NN) 4457 + (LL) 364
1D Compatibility (HY) -6800 + (ID) 3050
Total energy: -246456.0 ( -123.10 by residue)
QMean score : 0.042
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