Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------MGDNITSIREFLLLGFPVGPRIQMLLFGLFSLFYVFTLLGNGTILGLIS-----LDSRLHAPMYFFLSHLAVV--------------DIAYACNTVPRMLVNLLHPAKPISFAGRMMQTFL--------------FSTFAVTECLLLVVMSYDLYVAICHPLRYLAIMTWRVCITLAVTSWTTGVLLSLIHLV-----LLLPLPFCRPQKIYHFF--------CEILAVLKLACADTHINENMVLAGAISGL--------VGPLSTIVVSYMCILCAILQIQSRE-VQRKAFRTCFSHLCVIGLVYGTAIIMYVGPRYGNPKEQKKYLLLFHSLFNPMLNPLICSLRNSEVKNTLKRVLGVERAL------------------------------------------------------ |
| 4QIQ Chain:A ((7-470)) | SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV-YCVNYFIARSGDASWLNTDGWRYM--FASECIPALLFLMLLYTVPESPRWLMTLATQAVQEIKHSLDRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QIQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216252 for 2242 contacts (-96.5/contact) +
2D Compatibility (PS) -31113 + (NN) -4278 + (LL) 448
1D Compatibility (HY) -24000 + (ID) 2850
Total energy: -278045.0 ( -124.02 by residue)
QMean score : 0.199
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