Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAYEHKWYIIKVNYGHERNILELVSNAVYFKEVFIPYQTVCNSKSDIKEVCEVYVCMYLCDESRDILSKTLGFHSGDSSNFKIVLDEEVNLKRKEFNKYKWYILRVASNYEEKVCQHVLENSM------RLGVNDYFKEVFI-----PYEELSE-----------VELRSKKAAMRRKCFPGYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKKLSHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSIL-------GKPTIIELDLAQVEKIED |
| 4LL1 Chain:A ((5-296)) | ------IKSFEVVFNDPEKVYG--SGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQ-----------GSQQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGSVDYWVKAFLDRPSQPTQETKKNFEVVPDLMAPVSAKKEKKVSSMFIPDGRVSVSARIDRKGFCEGD----EISIHADFENTSSRIVVPKAAIVARHTYLANG-QTKVLTQKLSSVRGNHIISGTCASWRGKSLRVQ-KINILRVEYSLLIYVSVPGSKKVILDLPLVIGS---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LL1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80241 for 1736 contacts (-46.2/contact) +
2D Compatibility (PS) -26158 + (NN) 4296 + (LL) 2080
1D Compatibility (HY) -8400 + (ID) 2250
Total energy: -110673.0 ( -63.75 by residue)
QMean score : 0.193
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