Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAAGISTAQFDCIAQIGLD--KEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTGREKHITLTEKGQACYRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE
3JW4 Chain:A ((12-145))
----DTPYSYLIRSI----GMKLKTSADARLAELGLNSQQGRMIGYIYENQESGIIQKDLAQF------SITSMLQGLEKKGYIERR-----KNIYVLPKGAALVEEFNNIFLEVEESITKGLTKDEQKQLMSILIKVN-
General information:
TITO was launched using:
RESULT:
Template:
3JW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30398 for 692 contacts (-43.9/contact) +
2D Compatibility (PS) -13014 + (NN) -7164 + (LL) 1620
1D Compatibility (HY) -7200 + (ID) 1650
Total energy: -57806.0 ( -83.53 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3JW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JW4-query.scw
PDB file :
Tito_Scwrl_3JW4.pdb
: