Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRHFETTRRIVIKVGTSSLVQTSGKINLSKIDHLAFVISSLMNRGMEVILVSSGAMGFGLDILKMDKRPQEISQQQAVSSVGQ---VAMMSLYSQIFSHYQTHVSQILLTRDVVVFPE-SLQNVTNSFESLLSMGILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLFDKNPNIYDDAVLRSHVSEITD-DIIKSAGGAGSKFGTGGMLSKIKSAQMVFDNNGQMILMNGANPRDILKVLDGH--NIGTYFAQGK
2AKO Chain:A ((2-251))
--------KRIVVKVGSHVISEEN-TLSFERLKNLVAFLAKLME-KYEVILVTSAAISAGHTKLDIDRKN--LINKQVLAAIGQPFLISVYNELLAKFNKLGGQI---LLTGKDFDSRKATKHA-KNAIDMMINLGILPIINENDA---TAI-EEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWL----------HGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE---
General information:
TITO was launched using:
RESULT:
Template:
2AKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132145 for 1946 contacts (-67.9/contact) +
2D Compatibility (PS) -25783 + (NN) -15173 + (LL) 1736
1D Compatibility (HY) -20800 + (ID) 3850
Total energy: -196015.0 ( -100.73 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_2AKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AKO-query.scw
PDB file :
Tito_Scwrl_2AKO.pdb
: