Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWVSKGLSGASAAGIVGWVNSEGGFGKYSWNYRYVTTAELKNEG-YTFYNPAKLGYQIMKSVGTVGK
1EQ3 Chain:A ((36-131))
--------NA---------VKVRHILCEKH---------------------GKIMEAMEKLKSGM-RFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK--
General information:
TITO was launched using:
RESULT:
Template:
1EQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16593 for 651 contacts (-25.5/contact) +
2D Compatibility (PS) -10062 + (NN) -473 + (LL) 2188
1D Compatibility (HY) 400 + (ID) 700
Total energy: -25240.0 ( -38.77 by residue)
QMean score : 0.092
(partial model without unconserved sides chains):
PDB file :
Tito_1EQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQ3-query.scw
PDB file :
Tito_Scwrl_1EQ3.pdb
: