Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNQLKNNYFFAVIRGKSSEDALEIAKHAILGGIRNIEVTFSTPEASKVIKQLSDDFKNNKKIIVGAGTVMTTQLAKDAIDAGAKFLVSPHFDSDIANLANENKVYYFPGCATATEIVVARKYKCQIIKLFPGGVVGPDFIKDIHGPI-PDVDLMPSGGVSVSNVAEWRKAGAVAVGVGSALSSKVATEGYDSVTKIAKQFVSALD
2V82 Chain:A ((3-199))
---WQTKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYG--DKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQ--SVERTAQQAAAFVKAYR
General information:
TITO was launched using:
RESULT:
Template:
2V82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145882 for 1750 contacts (-83.4/contact) +
2D Compatibility (PS) -21131 + (NN) -10574 + (LL) 300
1D Compatibility (HY) -9600 + (ID) 2800
Total energy: -189687.0 ( -108.39 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_2V82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V82-query.scw
PDB file :
Tito_Scwrl_2V82.pdb
: