Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELGENTLLLSQDYLRREMLGTKDGE----------N-TTTIPLLINLLNYGY---HNCSYIILEGILRSDWYTPVWKHILKHNP-NNTYAYYYDLSFQETVKRHSTRLKSLEFGE---DSLARWWLEKDFL---KEIPEKILTKAMSLEDVKKLIMTDVLP
2CDN Chain:A ((19-200))
-SHMRVLLLGPPGAGKGTQAVKLAEKL--GIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALGK
General information:
TITO was launched using:
RESULT:
Template:
2CDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47641 for 1183 contacts (-40.3/contact) +
2D Compatibility (PS) -17245 + (NN) -8503 + (LL) 140
1D Compatibility (HY) 400 + (ID) 1200
Total energy: -74049.0 ( -62.59 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_2CDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDN-query.scw
PDB file :
Tito_Scwrl_2CDN.pdb
: