Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVTYWTGENLTLRAIQPEDIVIFDSLDDEILRNMDSLHFPRSANNMREWVEEQLEKDEFRFIAVESDNNIVGMIETFDCDRKNGTFGY-YLAVFEPYRGKGFAKEMILMVLRFFFLELAYQKVNTTVYSFNNPSIRLHEKLGFMKEGQLRKIIFT-KGAYYDGICFGMTREEFELNHG------
1YRE Chain:A ((13-195))-LPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGR-ALPLAVRLGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASF


General information:
TITO was launched using:
RESULT:

Template: 1YRE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 806 -53557 -66.45 -306.04
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -66.45
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.521

(partial model without unconserved sides chains):
PDB file : Tito_1YRE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YRE-query.scw
PDB file : Tito_Scwrl_1YRE.pdb: