Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTTRTERNFAGIGDVRIVYDVWTPDTAPQAVVVLAHGLGEHARRYDH-VAQRLGAAGLVTYALDHRGHGRSGGKRVLVRDISEYTADF-DTLVGIATREYPGCKRIVLGHSMGGGIVFAYGVERPDNYDLMVL-SAP-AVAAQDL-VSPVVAVAAKLLGVVVPGLPVQELDFTAISRD-PEVVQAY-NTDPLVHHGRVPAGIGRALLQVGETMPRRAPALTAPLLVLHGTDDR-LIPIEGSRRLVECVGSADVQLKEYPGLYHEVFNEPERNQVLDDVVAWLTERL- |
1R1D Chain:A ((6-247)) | -------------PPKPFFFE------AGERAVLLLHGFTGNSADV-RMLGRFLESKGYTCHAPIYKGHGVP-PEELVHTGPDDWWQDVMNGYQFLKNKGYE--KIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKR-------EGKSEEQIEQEMERFKQTPMKT-------------LKALQELIADVRAHLDLVYAPTFVVQARHDEMINP-DSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLESLDW |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172819 for 1932 contacts (-89.5/contact) +
2D Compatibility (PS) -24437 + (NN) -6668 + (LL) 1564
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -214260.0 ( -110.90 by residue)
QMean score : 0.416
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