Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPADHRNHAAVSTSVLSALFLGAGAALLSACSSPQHASTVPGTTPSIWTGSPAPSGLSGHDEESPGAQSLTSTLTAPDGTKVATAKFEFAN--GYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPTGGAPGNFLSAGGHYHVPGHTG------TPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGADNFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIGSG
4A7U Chain:A ((3-152))
----------------------------------------------------------------------KAVCVLKG-DGPVQGIINFEQKESNGPVKVWGSIK---GLTEGLHGFHVHEFGDNTA-----------GCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCITGRTLVVHEKADDLGKG-------------GNEESTKTGNAGSRLACGVIGIA
General information:
TITO was launched using:
RESULT:
Template:
4A7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73938 for 1172 contacts (-63.1/contact) +
2D Compatibility (PS) -16003 + (NN) -12865 + (LL) 1472
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -106534.0 ( -90.90 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_4A7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A7U-query.scw
PDB file :
Tito_Scwrl_4A7U.pdb
: