Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALPQSALSELLDAFRTGDGVD---LIRDAVRLVL--QELSE---------LEATERIGAARYERSDTRVTDRN-----GARSRVLSTQAGDVELRIPKLRKGSFFPAILEPRRRIDQALYAVV--------MEAYVH-------GISTRAVDDLVEAMGVET-----GISKSEVSRICA-----------GLDEIVGAF-RTRTLGHIEF-PYVYLDATYLNVRNGTGQVVSMA---------------VIVASGIAADGSREILGLDVGDSEDETF-----WRGFLTSLKGRGLGGVRLVI--SDQHAGLVKALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMF--------------RMIFSAPDAEAVHATWEGVRDR----LAASFPKIGPLMDDARAEVLAFTAFPKAHWQKIWSTNPLERINKEIKRR----SRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNAVVAAISGGQ------ |
3V5R Chain:A ((4-505)) | ---FEQKHLAVVDAFFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYEC---------SCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYEQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V5R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109792 for 3034 contacts (-36.2/contact) +
2D Compatibility (PS) -41866 + (NN) -3793 + (LL) 1340
1D Compatibility (HY) -5200 + (ID) 2450
Total energy: -161761.0 ( -53.32 by residue)
QMean score : 0.263
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