Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPPKIRRYIPADRDATLAIWLEASRVGH-GFLGEAELQKQKALVRDHY-L-----DASETWLALDGDTPLGFIGLLD------------------------------------AFIGGLFVAPTAHGRGIGRQLVEHAATLK-----GALEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQLRREH
1U6M Chain:A ((2-177))
----SLIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVYEHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLYNHMQKEVE---
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64365 for 833 contacts (-77.3/contact) +
2D Compatibility (PS) -14012 + (NN) -7948 + (LL) -36
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -92361.0 ( -110.88 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: