Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVAERLCATPCGPVIEFAGIDLSLGG----SRILDGVRLRVEAGSVHALVGPNGGGKSSLVKTLLGQM-PHRGELRLEWPGA-----------PGCIGYVPQALEFDRGLPLTVDDFMAAMCQRRPAFLGLSRSRRPAIDAALERVGMLAKRGRRMGALSGGERQRVLLAQGLVPPPQLLVLDEPMSALDEGGIQVFERLLLDWRQ-AGVTVLWIEHDLEAVGRLADRVSGLNR-HLLFDGPAASSLTPERLLTLFSTQPRKNAEASR
3TUI Chain:C ((23-254))
-------------HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR--TVFGNVALPLELDNTP---KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH-------------------
General information:
TITO was launched using:
RESULT:
Template:
3TUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147462 for 1764 contacts (-83.6/contact) +
2D Compatibility (PS) -22733 + (NN) -7233 + (LL) 2656
1D Compatibility (HY) -14400 + (ID) 2750
Total energy: -191922.0 ( -108.80 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3TUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TUI-query.scw
PDB file :
Tito_Scwrl_3TUI.pdb
: