Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
2V1K Chain:A ((1-153))
-GLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGDFGADAQGAMTKALELFRNDIAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
2V1K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70883 for 1112 contacts (-63.7/contact) +
2D Compatibility (PS) -16494 + (NN) -10792 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 6750
Total energy: -121911.0 ( -109.63 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_2V1K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V1K-query.scw
PDB file :
Tito_Scwrl_2V1K.pdb
: