Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLVLAVLLTVGAAQEGISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
1FDK Chain:A ((1-121))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK---
General information:
TITO was launched using:
RESULT:
Template:
1FDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67522 for 902 contacts (-74.9/contact) +
2D Compatibility (PS) -12780 + (NN) -6352 + (LL) 2508
1D Compatibility (HY) -16800 + (ID) 5100
Total energy: -106046.0 ( -117.57 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1FDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDK-query.scw
PDB file :
Tito_Scwrl_1FDK.pdb
: