Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1AM4 Chain:E ((2-177))
-QTIKCVVVGDGAVGKTCLLISYTTNKF---YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL--------------
General information:
TITO was launched using:
RESULT:
Template:
1AM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148517 for 1429 contacts (-103.9/contact) +
2D Compatibility (PS) -18407 + (NN) -8464 + (LL) 832
1D Compatibility (HY) -26000 + (ID) 8600
Total energy: -209156.0 ( -146.37 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_1AM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AM4-query.scw
PDB file :
Tito_Scwrl_1AM4.pdb
: